STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr44WD repeat domain 44. (909 aa)    
Predicted Functional Partners:
clec16a
C-type lectin domain containing 16A.
      
 0.674
aqr
Aquarius intron-binding spliceosomal factor.
      
 0.672
pank4
Pantothenate kinase.
      
 0.560
eif4a3
Eukaryotic translation initiation factor 4A3.
      
 0.559
vrk1
VRK serine/threonine kinase 1; Belongs to the protein kinase superfamily.
 
      0.494
kansl2
KAT8 regulatory NSL complex subunit 2.
      
 0.469
LOC101158703
Uncharacterized protein.
   
  
 0.455
LOC101168567
RAB guanine nucleotide exchange factor (GEF) 1.
   
  
 0.455
LOC101174364
RAB guanine nucleotide exchange factor (GEF) 1, like.
   
  
 0.455
LOC101164593
RRM domain-containing protein.
      
 0.444
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.