STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101173972Si:ch1073-184j22.1. (300 aa)    
Predicted Functional Partners:
dusp28
Dual specificity phosphatase 28.
      
 0.678
LOC101174545
Si:dkey-69o16.5.
      
 0.661
zc3h15
Zinc finger CCCH-type containing 15.
      
 0.622
sft2d3
Vesicle transport protein; May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. Belongs to the SFT2 family.
      
 0.620
proc
Protein C (inactivator of coagulation factors Va and VIIIa), a.
      
 0.575
WDR33
WD repeat domain 33.
      
 0.568
eos2
IKAROS family zinc finger 4.
      
 0.565
mettl22
Methyltransferase like 22.
      
 0.538
lmbr1l
Limb development membrane protein 1-like; Belongs to the LIMR family.
      
 0.522
ikzf4
Uncharacterized protein.
      
 0.518
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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