Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sgsm1Small G protein signaling modulator 1a. (1243 aa)    
Predicted Functional Partners:
fam13a
Family with sequence similarity 13 member A.
      
 0.651
cetn3
Centrin 3.
    
   0.628
LOC101170769
Centrin, EF-hand protein, 2.
    
   0.622
rfx1
Regulatory factor X, 1b (influences HLA class II expression).
      
 0.609
abca3
ATP-binding cassette, sub-family A (ABC1), member 3b.
      
 0.509
Ryr3
B30.2/SPRY domain-containing protein.
      
 0.499
pex1
Peroxisomal biogenesis factor 1.
      
 0.494
rundc1
RUN domain containing 1.
    
 
 0.478
glt1d1
Glycosyltransferase 1 domain containing 1.
      
 0.468
celsr1
Cadherin EGF LAG seven-pass G-type receptor 1a; Belongs to the G-protein coupled receptor 2 family.
      
 0.467
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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