tbc1d24 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

tbc1d24

TBC1 domain family, member 24. (568 aa)

Predicted Functional Partners:

LOC101172700

0.893

LOC101155198

0.721

ATP6V1B2

0.721

atp6v1ba

0.721

rab35

0.721

H2MN86_ORYLA

0.639

pigv

0.623

meak7

0.600

p2rx2

0.563

cdc16

0.552

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP6V1B2	LOC101172700	ENSORLP00000027466	ENSORLP00000038142	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.980
ATP6V1B2	atp6v1ba	ENSORLP00000027466	ENSORLP00000034915	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	0.900
ATP6V1B2	meak7	ENSORLP00000027466	ENSORLP00000019371	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	MTOR associated protein, eak-7 homolog.	0.489
ATP6V1B2	tbc1d24	ENSORLP00000027466	ENSORLP00000009026	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	TBC1 domain family, member 24.	0.721
H2MN86_ORYLA	LOC101155198	ENSORLP00000020187	ENSORLP00000001357	ADP-ribosylation factor 6b.	Si:dkey-16l2.16.	0.616
H2MN86_ORYLA	cdc16	ENSORLP00000020187	ENSORLP00000013747	ADP-ribosylation factor 6b.	Cell division cycle 16 homolog (S. cerevisiae).	0.575
H2MN86_ORYLA	rab35	ENSORLP00000020187	ENSORLP00000045332	ADP-ribosylation factor 6b.	RAB35, member RAS oncogene family b.	0.616
H2MN86_ORYLA	tbc1d24	ENSORLP00000020187	ENSORLP00000009026	ADP-ribosylation factor 6b.	TBC1 domain family, member 24.	0.639
LOC101155198	H2MN86_ORYLA	ENSORLP00000001357	ENSORLP00000020187	Si:dkey-16l2.16.	ADP-ribosylation factor 6b.	0.616
LOC101155198	rab35	ENSORLP00000001357	ENSORLP00000045332	Si:dkey-16l2.16.	RAB35, member RAS oncogene family b.	0.901
LOC101155198	tbc1d24	ENSORLP00000001357	ENSORLP00000009026	Si:dkey-16l2.16.	TBC1 domain family, member 24.	0.721
LOC101172700	ATP6V1B2	ENSORLP00000038142	ENSORLP00000027466	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	0.980
LOC101172700	atp6v1ba	ENSORLP00000038142	ENSORLP00000034915	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	0.980
LOC101172700	meak7	ENSORLP00000038142	ENSORLP00000019371	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	MTOR associated protein, eak-7 homolog.	0.650
LOC101172700	pigv	ENSORLP00000038142	ENSORLP00000005495	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	GPI mannosyltransferase 2; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis.	0.546
LOC101172700	tbc1d24	ENSORLP00000038142	ENSORLP00000009026	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	TBC1 domain family, member 24.	0.893
atp6v1ba	ATP6V1B2	ENSORLP00000034915	ENSORLP00000027466	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	0.900
atp6v1ba	LOC101172700	ENSORLP00000034915	ENSORLP00000038142	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.980
atp6v1ba	meak7	ENSORLP00000034915	ENSORLP00000019371	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	MTOR associated protein, eak-7 homolog.	0.489
atp6v1ba	tbc1d24	ENSORLP00000034915	ENSORLP00000009026	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	TBC1 domain family, member 24.	0.721