STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spag6Sperm associated antigen 6. (507 aa)    
Predicted Functional Partners:
spag17
Uncharacterized protein.
   
 
 0.936
H2LT72_ORYLA
Uncharacterized protein.
      
 0.912
Dnali1
Dynein, axonemal, light intermediate chain 1.
  
  
 0.897
spef2
Sperm flagellar 2.
    
 0.879
cfap52
Cilia and flagella associated protein 52.
  
 
 0.876
maats1
MYCBP-associated, testis expressed 1.
  
 
 
 0.798
kpnb1
Karyopherin (importin) beta 1.
   
 0.775
ENSORLP00000042788
Dynein, axonemal, intermediate chain 1, paralog 2.
   
  
 0.773
spata17
Spermatogenesis associated 17.
    
 
 0.770
rsph9
Radial spoke head 9 homolog.
  
  
 0.750
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.