STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spag6Sperm associated antigen 6. (507 aa)    
Predicted Functional Partners:
spag17
Uncharacterized protein.
    
 
 0.867
kpnb1
Karyopherin (importin) beta 1.
   
 0.831
spef2
Sperm flagellar 2.
   
 0.782
maats1
MYCBP-associated, testis expressed 1.
  
 
 
 0.714
cse1l
CSE1 chromosome segregation 1-like (yeast).
   
 
 0.689
H2LT72_ORYLA
Uncharacterized protein.
      
 0.668
LOC101157797
Cilia and flagella associated protein 45.
   
 
 0.665
nup153
Nucleoporin 153.
   
 
 0.664
NCBP1
Nuclear cap binding protein subunit 1.
   
 
 0.656
Dnali1
Dynein, axonemal, light intermediate chain 1.
  
  
 0.653
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.