Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101158777Synuclein, beta; Belongs to the synuclein family. (147 aa)    
Predicted Functional Partners:
snca
Uncharacterized protein; Belongs to the synuclein family.
   
 
 0.962
LOC101170044
Gamma-synuclein; Belongs to the synuclein family.
   
 
0.803
sncaip
Synuclein, alpha interacting protein.
    
 
 0.778
LOC101168745
Synuclein, gamma b (breast cancer-specific protein 1); Belongs to the synuclein family.
   
 
 0.771
unc5a
Unc-5 netrin receptor A.
   
  
 0.748
slc30a9
Solute carrier family 30 member 9.
      
 0.690
vdac1
Voltage-dependent anion channel 1.
      
 0.580
higd2a
HIG1 hypoxia inducible domain family, member 2A.
      
 0.539
tsta3
Tissue specific transplantation antigen P35B.
      
 0.535
LOC101160113
Microtubule-associated protein.
   
 
 0.529
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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