Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ttc5Tetratricopeptide repeat domain 5. (442 aa)    
Predicted Functional Partners:
JMY
Junction mediating and regulatory protein, p53 cofactor.
    
 0.968
LOC101160197
E1A binding protein p300 a.
    
 0.835
LOC101168870
E1A binding protein p300 b.
    
 0.835
gmps
Guanine monophosphate synthase.
  
 
 0.800
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
  
 
 0.799
ttc4
Tetratricopeptide repeat domain 4.
  
 
 0.790
chek2
Checkpoint kinase 2.
   
 
  0.790
rars2
Arginyl-tRNA synthetase 2, mitochondrial (putative); Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.771
eprs1
Glutamyl-prolyl-tRNA synthetase.
  
  
 0.771
LOC101169240
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
   
 0.768
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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