STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LSJ1_ORYLACOMM domain containing 3. (200 aa)    
Predicted Functional Partners:
ccdc22
Coiled-coil domain containing 22.
    
 0.848
commd2
COMM domain containing 2.
     
 0.641
commd8
COMM domain containing 8.
   
 
 0.555
COMMD10
COMM domain containing 10.
     
 0.533
LOC101158778
COMM domain containing 5.
     
 0.532
commd9
COMM domain containing 9.
     
 0.520
ubxn7
UBX domain protein 7.
     
  0.483
commd6
COMM domain containing 6.
     
 0.458
commd7
COMM domain containing 7.
     
 0.405
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.