H2LSK3_ORYLA protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

H2LSK3_ORYLA

Uncharacterized protein. (1800 aa)

Predicted Functional Partners:

ENSORLP00000036426

0.947

H2MHV1_ORYLA

0.946

Dnah9

0.945

ENSORLP00000029810

0.927

ENSORLP00000028438

0.819

LOC101170553

0.737

dctn2

0.731

H2MFT6_ORYLA

0.715

ENSORLP00000033951

0.685

LOC101162870

0.661

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Dnah9	ENSORLP00000028438	ENSORLP00000020554	ENSORLP00000028438	Uncharacterized protein.	Uncharacterized protein.	0.732
Dnah9	ENSORLP00000029810	ENSORLP00000020554	ENSORLP00000029810	Uncharacterized protein.	Uncharacterized protein.	0.925
Dnah9	H2LSK3_ORYLA	ENSORLP00000020554	ENSORLP00000009067	Uncharacterized protein.	Uncharacterized protein.	0.945
Dnah9	H2MFT6_ORYLA	ENSORLP00000020554	ENSORLP00000017463	Uncharacterized protein.	Uncharacterized protein.	0.715
Dnah9	LOC101162870	ENSORLP00000020554	ENSORLP00000031330	Uncharacterized protein.	Dynactin 1a.	0.499
Dnah9	LOC101170553	ENSORLP00000020554	ENSORLP00000020619	Uncharacterized protein.	NME/NM23 family member 8; Belongs to the NDK family.	0.658
Dnah9	dctn2	ENSORLP00000020554	ENSORLP00000006746	Uncharacterized protein.	Dynactin 2 (p50).	0.627
ENSORLP00000028438	Dnah9	ENSORLP00000028438	ENSORLP00000020554	Uncharacterized protein.	Uncharacterized protein.	0.732
ENSORLP00000028438	H2LSK3_ORYLA	ENSORLP00000028438	ENSORLP00000009067	Uncharacterized protein.	Uncharacterized protein.	0.819
ENSORLP00000028438	H2MFT6_ORYLA	ENSORLP00000028438	ENSORLP00000017463	Uncharacterized protein.	Uncharacterized protein.	0.715
ENSORLP00000028438	H2MHV1_ORYLA	ENSORLP00000028438	ENSORLP00000018220	Uncharacterized protein.	Uncharacterized protein.	0.900
ENSORLP00000028438	LOC101162870	ENSORLP00000028438	ENSORLP00000031330	Uncharacterized protein.	Dynactin 1a.	0.661
ENSORLP00000028438	LOC101170553	ENSORLP00000028438	ENSORLP00000020619	Uncharacterized protein.	NME/NM23 family member 8; Belongs to the NDK family.	0.704
ENSORLP00000028438	dctn2	ENSORLP00000028438	ENSORLP00000006746	Uncharacterized protein.	Dynactin 2 (p50).	0.731
ENSORLP00000029810	Dnah9	ENSORLP00000029810	ENSORLP00000020554	Uncharacterized protein.	Uncharacterized protein.	0.925
ENSORLP00000029810	ENSORLP00000033951	ENSORLP00000029810	ENSORLP00000033951	Uncharacterized protein.	Uncharacterized protein.	0.950
ENSORLP00000029810	H2LSK3_ORYLA	ENSORLP00000029810	ENSORLP00000009067	Uncharacterized protein.	Uncharacterized protein.	0.927
ENSORLP00000029810	H2MFT6_ORYLA	ENSORLP00000029810	ENSORLP00000017463	Uncharacterized protein.	Uncharacterized protein.	0.715
ENSORLP00000029810	H2MHV1_ORYLA	ENSORLP00000029810	ENSORLP00000018220	Uncharacterized protein.	Uncharacterized protein.	0.928
ENSORLP00000029810	LOC101162870	ENSORLP00000029810	ENSORLP00000031330	Uncharacterized protein.	Dynactin 1a.	0.661