STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
islr2Immunoglobulin superfamily containing leucine-rich repeat 2. (712 aa)    
Predicted Functional Partners:
LOC101162995
Bone morphogenetic protein/retinoic acid inducible neural-specific 3a, tandem duplicate 1.
   
  
 0.835
sae1
SUMO1 activating enzyme subunit 1.
     
 0.644
H2LW70_ORYLA
Vasorin b.
   
 
 0.622
VASN
Vasorin a.
   
 
 0.622
LOC101154816
Cadherin 12, type 2a (N-cadherin 2); Cadherins are calcium-dependent cell adhesion proteins.
     
 0.535
lrrc40
Leucine rich repeat containing 40.
    
 
 0.524
chst8
Carbohydrate sulfotransferase.
    
  0.503
g3bp1
GTPase activating protein (SH3 domain) binding protein 1.
    
 
 0.500
g3bp2
Zgc:56304.
    
 
 0.500
samhd1
SAM domain and HD domain 1.
      
 0.479
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.