STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrvi1Murine retrovirus integration site 1 homolog. (847 aa)    
Predicted Functional Partners:
prkg1
cGMP-dependent protein kinase.
   
 0.946
Itpr2
Inositol 1,4,5-trisphosphate receptor, type 2.
    
 0.945
LOC101167700
Inositol 1,4,5-trisphosphate receptor, type 1a.
    
 0.945
LOC101159348
Link domain-containing protein.
     
 0.558
efhb
Uncharacterized protein.
      
 0.531
chp1
Calcineurin-like EF-hand protein 1.
    
  0.516
LOC101155618
cGMP-dependent protein kinase.
   
 0.483
LOC101165996
cGMP-dependent protein kinase.
   
 0.483
H2MSF0_ORYLA
Si:dkey-121j17.5; Belongs to the protein kinase superfamily.
   
 0.483
prkg2
cGMP-dependent protein kinase.
   
 0.483
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.