Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
mrvi1Murine retrovirus integration site 1 homolog. (847 aa)    
Predicted Functional Partners:
prkg1
cGMP-dependent protein kinase.
   
 0.964
Itpr2
Inositol 1,4,5-trisphosphate receptor, type 2.
    
 0.952
LOC101155104
Inositol 1,4,5-trisphosphate receptor, type 1b.
    
 0.952
LOC101167700
Inositol 1,4,5-trisphosphate receptor, type 1a.
    
 0.952
itpr3
Inositol 1,4,5-trisphosphate receptor, type 3.
    
 0.952
efhb
Uncharacterized protein.
    
 
 0.711
LOC101155618
cGMP-dependent protein kinase.
   
 0.660
LOC101165996
cGMP-dependent protein kinase.
   
 0.660
H2MSF0_ORYLA
Si:dkey-121j17.5; Belongs to the protein kinase superfamily.
   
 0.660
prkg2
cGMP-dependent protein kinase.
   
 0.660
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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