STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbcdTubulin folding cofactor D. (1195 aa)    
Predicted Functional Partners:
tbce
Tubulin folding cofactor E.
    
 0.964
arl2
ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.
    
 0.957
Tbcc
Tubulin folding cofactor C.
    
 0.773
pfdn4
Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family.
    
 
 0.767
tbcb
Tubulin folding cofactor B.
    
 0.766
tbca
Tubulin-specific chaperone A; Belongs to the TBCA family.
    
 0.752
adhfe1
Alcohol dehydrogenase iron containing 1.
  
  
 0.739
mad2l1
HORMA domain-containing protein.
    
   0.726
eprs1
Glutamyl-prolyl-tRNA synthetase.
     
 0.707
mad1l1
Mitotic arrest deficient 1 like 1.
   
 
 0.695
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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