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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MTFP1Mitochondrial fission process 1. (164 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
    
  0.677
tomm70
Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae).
     
 0.540
dap3
Death associated protein 3.
      
 0.487
rps27a
Ribosomal protein S27a.
    
  0.484
snx15
Sorting nexin 15.
      
 0.450
LOC101160205
Zgc:109986.
     
 0.423
LOC101169311
Translocase of outer mitochondrial membrane 20.
     
 0.423
LOC101172049
Translocase of outer mitochondrial membrane 20b.
     
 0.423
usp49
Ubiquitin carboxyl-terminal hydrolase.
     
 0.421
usp3
Ubiquitin carboxyl-terminal hydrolase.
     
 0.421
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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