STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdia4Protein disulfide-isomerase A4; Belongs to the protein disulfide isomerase family. (640 aa)    
Predicted Functional Partners:
LOC101167922
Endoplasmic reticulum oxidoreductase alpha.
   
 0.976
ero1b
Endoplasmic reticulum oxidoreductase beta.
   
 0.976
hspa5
Uncharacterized protein; Belongs to the heat shock protein 70 family.
   
 0.924
tapbp
Uncharacterized protein.
    
 0.863
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
   
 0.855
LOC101160304
Calreticulin.
   
 0.848
LOC101162115
Calreticulin.
   
 0.848
LOC101169735
Calreticulin.
   
 0.848
rpa2
Replication protein A2.
    
 0.801
pdia6
Protein disulfide isomerase family A, member 6; Belongs to the protein disulfide isomerase family.
   
0.724
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.