STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
herc3HECT and RLD domain containing E3 ubiquitin protein ligase 3. (1047 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
 
0.712
foxl1
Forkhead box L1.
    
 0.682
MAF
MAF bZIP transcription factor; Belongs to the bZIP family.
      
 0.672
psmb2
Proteasome subunit beta.
    
 
 0.631
ube2l3
Ubiquitin-conjugating enzyme E2L 3b; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.621
LOC101158291
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.579
ifih1
Interferon induced with helicase C domain 1.
   
 
 0.539
rpl7
Ribosomal protein L7.
    
 
 0.524
slc45a2
Uncharacterized protein.
      
 0.505
dhx58
DEXH (Asp-Glu-X-His) box polypeptide 58.
   
 
 0.478
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.