STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pin4Peptidyl-prolyl cis-trans isomerase. (135 aa)    
Predicted Functional Partners:
rnf44
Ring finger protein 44.
    
 
 0.848
LOC101160327
Cytoplasmic polyadenylation element binding protein 4a.
    
 
 0.845
nhsl2
NHS-like 2.
      
 0.753
faf2
Fas associated factor family member 2.
 
    
 0.751
shisal1
Shisa like 1b.
      
 0.749
wdr48
WD repeat domain 48b.
 
      0.710
eprs1
Glutamyl-prolyl-tRNA synthetase.
  
  
 0.704
pin1
Peptidyl-prolyl cis-trans isomerase.
   
  
 0.693
ttc9b
Tetratricopeptide repeat domain 9B.
   
 
 0.645
kin
Kin17 DNA and RNA binding protein.
 
      0.645
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.