LOC101168997 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101168997

Si:ch211-217a12.1. (491 aa)

Predicted Functional Partners:

got2

0.969

LOC101156855

0.955

GOT1

0.953

got1

0.953

LOC101157325

0.942

LOC101174079

0.942

nags

0.938

agxt2

0.928

LOC101169635

0.916

fh

0.915

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GOT1	LOC101156855	ENSORLP00000000037	ENSORLP00000013071	Aspartate aminotransferase.	Glutamate dehydrogenase 1b; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.964
GOT1	LOC101168997	ENSORLP00000000037	ENSORLP00000009161	Aspartate aminotransferase.	Si:ch211-217a12.1.	0.953
GOT1	LOC101169635	ENSORLP00000000037	ENSORLP00000007755	Aspartate aminotransferase.	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.955
GOT1	fh	ENSORLP00000000037	ENSORLP00000021207	Aspartate aminotransferase.	Fumarate hydratase.	0.955
GOT1	got1	ENSORLP00000000037	ENSORLP00000009694	Aspartate aminotransferase.	Aspartate aminotransferase.	0.900
GOT1	got2	ENSORLP00000000037	ENSORLP00000011267	Aspartate aminotransferase.	Aspartate aminotransferase.	0.966
GOT1	nags	ENSORLP00000000037	ENSORLP00000023427	Aspartate aminotransferase.	N-acetylglutamate synthase.	0.930
LOC101156855	GOT1	ENSORLP00000013071	ENSORLP00000000037	Glutamate dehydrogenase 1b; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Aspartate aminotransferase.	0.964
LOC101156855	LOC101157325	ENSORLP00000013071	ENSORLP00000020520	Glutamate dehydrogenase 1b; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Alanine--glyoxylate and serine--pyruvate aminotransferase b.	0.510
LOC101156855	LOC101168997	ENSORLP00000013071	ENSORLP00000009161	Glutamate dehydrogenase 1b; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Si:ch211-217a12.1.	0.955
LOC101156855	LOC101169635	ENSORLP00000013071	ENSORLP00000007755	Glutamate dehydrogenase 1b; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.754
LOC101156855	LOC101174079	ENSORLP00000013071	ENSORLP00000024097	Glutamate dehydrogenase 1b; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Alanine--glyoxylate and serine--pyruvate aminotransferase a.	0.510
LOC101156855	agxt2	ENSORLP00000013071	ENSORLP00000044031	Glutamate dehydrogenase 1b; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.732
LOC101156855	fh	ENSORLP00000013071	ENSORLP00000021207	Glutamate dehydrogenase 1b; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Fumarate hydratase.	0.692
LOC101156855	got1	ENSORLP00000013071	ENSORLP00000009694	Glutamate dehydrogenase 1b; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Aspartate aminotransferase.	0.964
LOC101156855	got2	ENSORLP00000013071	ENSORLP00000011267	Glutamate dehydrogenase 1b; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Aspartate aminotransferase.	0.978
LOC101156855	nags	ENSORLP00000013071	ENSORLP00000023427	Glutamate dehydrogenase 1b; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	N-acetylglutamate synthase.	0.968
LOC101157325	LOC101156855	ENSORLP00000020520	ENSORLP00000013071	Alanine--glyoxylate and serine--pyruvate aminotransferase b.	Glutamate dehydrogenase 1b; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.510
LOC101157325	LOC101168997	ENSORLP00000020520	ENSORLP00000009161	Alanine--glyoxylate and serine--pyruvate aminotransferase b.	Si:ch211-217a12.1.	0.942
LOC101157325	LOC101174079	ENSORLP00000020520	ENSORLP00000024097	Alanine--glyoxylate and serine--pyruvate aminotransferase b.	Alanine--glyoxylate and serine--pyruvate aminotransferase a.	0.927