STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbx3T-box transcription factor 3a. (719 aa)    
Predicted Functional Partners:
kntc1
Kinetochore associated 1.
   
  
 0.737
shox2
Short stature homeobox 2.
    
 0.573
esrrb
Uncharacterized protein.
    
 
 0.554
nkx2-5
Homeobox domain-containing protein.
   
 
 0.547
LOC100125511
Metalloendopeptidase.
      
 0.466
alx1
ALX homeobox 1.
   
 0.450
sall4
Spalt-like transcription factor 4.
   
 
 0.449
wnt3
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
    
 0.445
LOC101166969
Zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila).
    
 
 0.441
nr5a2
Uncharacterized protein.
   
 
 0.439
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.