STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankrd28Ankyrin repeat domain 28b. (1052 aa)    
Predicted Functional Partners:
crk
CRK proto-oncogene, adaptor protein.
    
 0.765
LOC101171716
Serine/threonine-protein phosphatase.
    
 0.683
PPP6C
Serine/threonine-protein phosphatase.
    
 0.683
ppp6r2
Protein phosphatase 6, regulatory subunit 2a.
    
 0.648
ppp6r3
Protein phosphatase 6, regulatory subunit 3.
    
 0.648
LOC101175152
Protein phosphatase 6, regulatory subunit 2b.
    
 0.648
ENSORLP00000040326
Death domain-containing protein.
 
  
 0.548
ENSORLP00000040037
Uncharacterized protein.
    
 0.531
ift81
Intraflagellar transport 81 homolog.
    
 0.496
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.458
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.