STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankrd28Ankyrin repeat domain 28b. (1052 aa)    
Predicted Functional Partners:
LOC101171716
Serine/threonine-protein phosphatase.
    
 0.849
PPP6C
Serine/threonine-protein phosphatase.
    
 0.849
ppp6r2
Protein phosphatase 6, regulatory subunit 2a.
   
 0.718
ppp6r3
Protein phosphatase 6, regulatory subunit 3.
   
 0.718
LOC101175152
Protein phosphatase 6, regulatory subunit 2b.
   
 0.718
crk
CRK proto-oncogene, adaptor protein.
    
 0.685
usp10
Ubiquitin carboxyl-terminal hydrolase.
   
   0.660
ENSORLP00000040326
Death domain-containing protein.
 
  
 0.647
ENSORLP00000040037
Uncharacterized protein.
    
 0.634
eno4
Enolase 4.
    
 
 0.502
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.