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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
man2c1Mannosidase, alpha, class 2C, member 1. (1021 aa)    
Predicted Functional Partners:
man2b2
Alpha-mannosidase.
     
0.944
man2b1
Alpha-mannosidase.
     
0.944
mogs
Mannosyl-oligosaccharide glucosidase.
   
  
 0.758
engase
Endo-beta-N-acetylglucosaminidase.
  
  
 0.724
dnpep
Aspartyl aminopeptidase; Belongs to the peptidase M18 family.
   
 
 0.697
gne
Glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase.
  
  
 0.638
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 
 0.629
LOC101155936
NBR1 autophagy cargo receptor b.
   
 
 0.592
nbr1
NBR1 autophagy cargo receptor a.
   
 
 0.592
manba
Mannosidase, beta A, lysosomal.
     
 0.574
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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