Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
man2c1Mannosidase, alpha, class 2C, member 1. (1021 aa)    
Predicted Functional Partners:
man2b2
Alpha-mannosidase.
     
0.948
man2b1
Alpha-mannosidase.
     
0.948
xrn1
5'-3' exoribonuclease 1.
    
   0.926
engase
Endo-beta-N-acetylglucosaminidase.
  
  
 0.776
dnpep
Aspartyl aminopeptidase; Belongs to the peptidase M18 family.
   
 
 0.768
glyctk
Glycerate kinase.
     
  0.759
eogt
EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase.
      
 0.757
ctbs
Chitobiase, di-N-acetyl-; Belongs to the glycosyl hydrolase 18 family.
  
  
 0.754
edem1
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
      
 0.742
ngly1
N-glycanase 1.
      
 0.711
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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