STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nkx2-5Homeobox domain-containing protein. (319 aa)    
Predicted Functional Partners:
gata4
GATA binding protein 4.
   
 0.947
LOC101161908
T-box transcription factor 5a.
   
 
 0.897
gata6
GATA binding protein 6.
   
 0.892
tbx5
Uncharacterized protein.
   
 
 0.874
gata5
GATA binding protein 5.
   
 0.874
tbx20
T-box transcription factor 20.
   
 
 0.843
mef2c
Myocyte enhancer factor 2cb.
    
 
 0.838
gata-1
Hematopietic transcription factor GATA-1.
   
 0.838
hand2
Heart and neural crest derivatives expressed 2.
   
 
 0.836
ENSORLP00000033335
MADS-box domain-containing protein.
    
 
 0.806
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.