Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dock10Dedicator of cytokinesis 10; Belongs to the DOCK family. (1989 aa)    
Predicted Functional Partners:
CDC42
Cell division cycle 42.
   
 0.900
LOC101164400
Uncharacterized protein.
   
 0.900
LOC101159016
Uncharacterized protein.
   
 0.785
LOC101175028
Uncharacterized protein.
   
 0.785
LOC105354522
Rac family small GTPase 3b.
   
 0.781
LOC101163549
Uncharacterized protein.
   
 0.781
dhx37
DEAH (Asp-Glu-Ala-His) box polypeptide 37.
      
 0.717
zzef1
Zinc finger, ZZ-type with EF hand domain 1.
      
 0.698
rhof
Ras homolog family member F.
   
 0.638
LOC101164658
Uncharacterized protein.
   
 0.591
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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