LOC101160821 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101160821

BCL2 interacting protein 1a. (229 aa)

Predicted Functional Partners:

stx18

0.998

use1

0.998

LOC101168279

0.981

LOC101164343

0.981

nbas

0.979

rint1

0.971

vamp4

0.969

LOC101172966

0.967

stx10

0.967

gosr1

0.962

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101160821	LOC101164343	ENSORLP00000009225	ENSORLP00000027871	BCL2 interacting protein 1a.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.981
LOC101160821	LOC101168279	ENSORLP00000009225	ENSORLP00000026411	BCL2 interacting protein 1a.	SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.	0.981
LOC101160821	LOC101172966	ENSORLP00000009225	ENSORLP00000000116	BCL2 interacting protein 1a.	Syntaxin 6; Belongs to the syntaxin family.	0.967
LOC101160821	gosr1	ENSORLP00000009225	ENSORLP00000010297	BCL2 interacting protein 1a.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.962
LOC101160821	nbas	ENSORLP00000009225	ENSORLP00000020866	BCL2 interacting protein 1a.	Neuroblastoma amplified sequence.	0.979
LOC101160821	rint1	ENSORLP00000009225	ENSORLP00000015850	BCL2 interacting protein 1a.	RAD50 interactor 1.	0.971
LOC101160821	stx10	ENSORLP00000009225	ENSORLP00000024914	BCL2 interacting protein 1a.	Syntaxin 10.	0.967
LOC101160821	stx18	ENSORLP00000009225	ENSORLP00000020958	BCL2 interacting protein 1a.	Syntaxin 18.	0.998
LOC101160821	use1	ENSORLP00000009225	ENSORLP00000038623	BCL2 interacting protein 1a.	Unconventional SNARE in the ER 1 homolog (S. cerevisiae).	0.998
LOC101160821	vamp4	ENSORLP00000009225	ENSORLP00000002367	BCL2 interacting protein 1a.	Vesicle-associated membrane protein 4.	0.969
LOC101164343	LOC101160821	ENSORLP00000027871	ENSORLP00000009225	Uncharacterized protein; Belongs to the synaptobrevin family.	BCL2 interacting protein 1a.	0.981
LOC101164343	LOC101168279	ENSORLP00000027871	ENSORLP00000026411	Uncharacterized protein; Belongs to the synaptobrevin family.	SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.	0.901
LOC101164343	LOC101172966	ENSORLP00000027871	ENSORLP00000000116	Uncharacterized protein; Belongs to the synaptobrevin family.	Syntaxin 6; Belongs to the syntaxin family.	0.977
LOC101164343	gosr1	ENSORLP00000027871	ENSORLP00000010297	Uncharacterized protein; Belongs to the synaptobrevin family.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.991
LOC101164343	nbas	ENSORLP00000027871	ENSORLP00000020866	Uncharacterized protein; Belongs to the synaptobrevin family.	Neuroblastoma amplified sequence.	0.937
LOC101164343	rint1	ENSORLP00000027871	ENSORLP00000015850	Uncharacterized protein; Belongs to the synaptobrevin family.	RAD50 interactor 1.	0.875
LOC101164343	stx10	ENSORLP00000027871	ENSORLP00000024914	Uncharacterized protein; Belongs to the synaptobrevin family.	Syntaxin 10.	0.977
LOC101164343	stx18	ENSORLP00000027871	ENSORLP00000020958	Uncharacterized protein; Belongs to the synaptobrevin family.	Syntaxin 18.	0.996
LOC101164343	use1	ENSORLP00000027871	ENSORLP00000038623	Uncharacterized protein; Belongs to the synaptobrevin family.	Unconventional SNARE in the ER 1 homolog (S. cerevisiae).	0.994
LOC101164343	vamp4	ENSORLP00000027871	ENSORLP00000002367	Uncharacterized protein; Belongs to the synaptobrevin family.	Vesicle-associated membrane protein 4.	0.943