Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
shox2Short stature homeobox 2. (301 aa)    
Predicted Functional Partners:
LOC101175611
T-box transcription factor 18.
   
 0.778
tbx3
T-box transcription factor 3a.
    
 0.755
H2MD80_ORYLA
Hyperpolarization activated cyclic nucleotide-gated potassium channel 4.
      
 0.693
LOC101159259
Cyclic nucleotide-binding domain-containing protein.
      
 0.693
prdm16
Si:ch211-263k4.2.
    
 0.663
LOC101161908
T-box transcription factor 5a.
    
 0.622
sox5
HMG box domain-containing protein.
    
 
 0.614
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
    
   0.600
banp
BTG3 associated nuclear protein.
      
 0.566
bmp4
Bone morphogenetic protein 4.
    
 
 0.506
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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