STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smc1aStructural maintenance of chromosomes protein. (1231 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes protein.
   
0.998
rad21
Uncharacterized protein.
   
 0.996
LOC101173147
RAD21 cohesin complex component like 1.
   
 0.991
espl1
Extra spindle pole bodies like 1, separase.
   
 0.982
pds5a
PDS5 cohesin associated factor A.
   
 0.976
LOC100301585
Stromal antigen 2b.
   
 0.969
H2M569_ORYLA
SCD domain-containing protein.
   
 0.969
stag1
Stromal antigen 1a.
   
 0.969
LOC101173396
SCD domain-containing protein.
   
 0.969
LOC101158626
Stromal antigen 2a.
   
 0.969
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.