Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170959Apoptotic chromatin condensation inducer 1b. (1146 aa)    
Predicted Functional Partners:
sap18
Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.
   
 0.981
rnps1
RNA binding protein S1, serine-rich domain.
   
 0.978
eif4a3
Eukaryotic translation initiation factor 4A3.
    
 0.960
Pnn
Pinin, desmosome associated protein.
   
 0.930
ENSORLP00000039193
Pinin_SDK_N domain-containing protein.
   
 0.930
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.901
LOC101162294
Cwf21 domain-containing protein.
   
 
 0.901
LOC101167611
Mago homolog, exon junction complex subunit.
    
 0.900
acin1
SAP domain-containing protein.
     
 
0.900
ALYREF
Aly/REF export factor.
   
 0.898
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.