STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf13Ring finger protein 13. (375 aa)    
Predicted Functional Partners:
parp16
Poly [ADP-ribose] polymerase.
    
 
 0.814
rps27a
Ribosomal protein S27a.
    
  0.593
ubc
Ubiquitin B.
    
  0.564
otub1
Ubiquitin thioesterase.
    
 0.520
OTUB2
OTU deubiquitinase, ubiquitin aldehyde binding 2.
    
 0.515
cskmt
Methyltranfer_dom domain-containing protein.
    
 0.515
tmbim6
Testis enhanced gene transcript (BAX inhibitor 1); Belongs to the BI1 family.
      
 0.507
usp14
Ubiquitin carboxyl-terminal hydrolase.
      
 0.506
nek7
NIMA-related kinase 7; Belongs to the protein kinase superfamily.
      
 0.502
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.489
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.