STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf13Ring finger protein 13. (375 aa)    
Predicted Functional Partners:
parp16
Poly [ADP-ribose] polymerase.
    
 
 0.795
ap3d1
Adaptor related protein complex 3 subunit delta 1.
    
   0.668
cd63
Tetraspanin.
   
 
 0.643
LOC101158688
Transmembrane protein 183A.
      
 0.586
hsf2bp
Heat shock transcription factor 2 binding protein.
      
 0.584
nus1
NUS1 dehydrodolichyl diphosphate synthase subunit.
    
 
 0.566
pcmt1
Protein-L-isoaspartate O-methyltransferase.
      
 0.530
snapin
SNAP associated protein.
    
 
 0.524
AP3S1
Adaptor related protein complex 3 subunit sigma 1.
    
 
 0.514
ap3s2
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
    
 
 0.514
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.