Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mmaaMetabolism of cobalamin associated A. (406 aa)    
Predicted Functional Partners:
mmut
Methylmalonyl CoA mutase.
  
 
 0.999
mcee
Methylmalonyl CoA epimerase.
  
   
 0.916
mmadhc
Zgc:92335.
      
 0.914
mmab
Corrinoid adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
      
 0.914
ECHDC1
Ethylmalonyl-CoA decarboxylase 1; Belongs to the enoyl-CoA hydratase/isomerase family.
   
  
 0.905
lmbrd1
LMBR1 domain containing 1.
      
 0.902
thrb
Thyroid hormone receptor beta.
    
 
 0.817
tnpo3
Transportin 3.
      
 0.780
mmachc
Metabolism of cobalamin associated C.
      
 0.768
rabepk
Rab9 effector protein with kelch motifs.
      
 0.740
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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