STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161743D4, zinc and double PHD fingers family 2. (405 aa)    
Predicted Functional Partners:
LOC101156929
ARID domain-containing protein.
   
 0.989
LOC101169626
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
   
 0.984
LOC101163885
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
   
 0.984
LOC101173968
AT rich interactive domain 1Aa (SWI-like).
   
 0.973
LOC101159069
AT rich interactive domain 1Ab (SWI-like).
   
 0.973
smarcc1
Uncharacterized protein.
    
 0.967
LOC101164905
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b.
    
 0.967
ENSORLP00000044090
Uncharacterized protein.
     
 0.902
dpf1
D4, zinc and double PHD fingers family 1.
  
  
 
0.901
LOC101173716
Uncharacterized protein.
  
  
 
0.901
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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