STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159094Polyhomeotic homolog 2b (Drosophila). (925 aa)    
Predicted Functional Partners:
ENSORLP00000026150
Chromobox homolog 6a.
    
 0.869
LOC101160413
Chromobox homolog 8a (Pc class homolog, Drosophila).
    
 0.829
cbx8
Chromobox homolog 8b.
    
 0.829
pcgf5
Polycomb group ring finger 5a.
    
 0.809
rnf2
Ring finger protein 2.
    
 0.801
RING1
Ring finger protein 1.
    
 0.801
cbx2
Chromo domain-containing protein.
    
 0.797
LOC101172611
Chromo domain-containing protein.
    
 0.791
H2LSI7_ORYLA
Bmi1 polycomb ring finger oncogene 1a.
    
 0.787
pcgf2
RING-type domain-containing protein.
    
 0.787
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.