Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fkbp14Peptidylprolyl isomerase. (216 aa)    
Predicted Functional Partners:
fblim1
Filamin binding LIM protein 1.
      
 0.714
c8h17orf75
Zgc:153240.
      
 0.712
kcnh8
Potassium voltage-gated channel, subfamily H (eag-related), member 8.
      
 0.695
LOC101156677
Potassium channel, subfamily K, member 5b; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.
      
 0.692
efcab1
EF-hand calcium binding domain 1.
   
 
 0.610
rspry1
Ring finger and SPRY domain containing 1.
      
 0.596
gpatch3
G patch domain containing 3.
    
 
 0.586
DYNC1I1
Dynein cytoplasmic 1 intermediate chain 1.
     
 0.564
ATAD3A
ATPase family AAA domain containing 3A.
      
 0.548
LOC101168633
Uncharacterized protein.
      
 0.523
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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