STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mmabCorrinoid adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family. (236 aa)    
Predicted Functional Partners:
LOC101169560
Transient receptor potential cation channel, subfamily V, member 6; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.941
mmaa
Metabolism of cobalamin associated A.
      
 0.914
mmadhc
Zgc:92335.
      
 0.910
nmd3
60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.
      
 0.887
ssh1
Slingshot protein phosphatase 1a.
      
 0.883
lmbrd1
LMBR1 domain containing 1.
      
 0.880
aicda
Activation-induced cytidine deaminase.
      
 0.879
mmut
Methylmalonyl CoA mutase.
      
 0.877
LOC101168893
Kell metallo-endopeptidase (Kell blood group).
      
 0.839
emc6
ER membrane protein complex subunit 6.
      
 0.838
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.