STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmabCorrinoid adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family. (236 aa)    
Predicted Functional Partners:
iyd
Iodotyrosine deiodinase.
    
 0.873
mmaa
Metabolism of cobalamin associated A.
      
 0.673
mmut
Methylmalonyl CoA mutase.
      
 0.670
eprs1
Glutamyl-prolyl-tRNA synthetase.
     
 0.669
mmadhc
Zgc:92335.
      
 0.665
ppcdc
Phosphopantothenoylcysteine decarboxylase.
     
 0.603
uros
Uroporphyrinogen III synthase.
  
  
 0.602
mcee
Methylmalonyl CoA epimerase.
     
 0.577
adhfe1
Alcohol dehydrogenase iron containing 1.
  
 
 0.575
urod
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
     
 0.563
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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