Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lamc1Uncharacterized protein. (1595 aa)    
Predicted Functional Partners:
ENSORLP00000041473
Uncharacterized protein.
 
 
 0.935
lamb1
Laminin, beta 1a.
   
 0.917
lamb2
Laminin, beta 2 (laminin S).
   
 0.917
LOC101158765
Laminin, beta 2-like.
   
0.912
LOC101159348
Link domain-containing protein.
     
 0.903
LOC101165682
Laminin, beta 1b.
   
 0.898
lamb3
Uncharacterized protein.
   
0.885
dag1
Dystroglycan 1.
   
 0.833
LOC101165732
Peptidase S72 domain-containing protein.
   
 0.833
itgb4
Integrin beta.
   
 0.828
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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