lsm11 protein (Oryzias latipes) - STRING interaction network

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Score

lsm11

LSM11, U7 small nuclear RNA associated. (324 aa)

Predicted Functional Partners:

LSM10

0.999

snrpe

0.992

snrpg

0.980

snrpd3

0.952

ddx20

0.939

cpsf3

0.938

snrpd1

0.929

sympk

0.920

LOC100049345

0.915

cpsf2

0.882

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100049345	LSM10	ENSORLP00000013230	ENSORLP00000011915	Survival of motor neuron 1, telomeric.	LSM10, U7 small nuclear RNA associated.	0.883
LOC100049345	ddx20	ENSORLP00000013230	ENSORLP00000011224	Survival of motor neuron 1, telomeric.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	0.999
LOC100049345	lsm11	ENSORLP00000013230	ENSORLP00000009313	Survival of motor neuron 1, telomeric.	LSM11, U7 small nuclear RNA associated.	0.915
LOC100049345	snrpd1	ENSORLP00000013230	ENSORLP00000015671	Survival of motor neuron 1, telomeric.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.990
LOC100049345	snrpd3	ENSORLP00000013230	ENSORLP00000030977	Survival of motor neuron 1, telomeric.	Small nuclear ribonucleoprotein Sm D3.	0.986
LOC100049345	snrpe	ENSORLP00000013230	ENSORLP00000029192	Survival of motor neuron 1, telomeric.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.977
LOC100049345	snrpg	ENSORLP00000013230	ENSORLP00000030086	Survival of motor neuron 1, telomeric.	Small nuclear ribonucleoprotein G.	0.987
LSM10	LOC100049345	ENSORLP00000011915	ENSORLP00000013230	LSM10, U7 small nuclear RNA associated.	Survival of motor neuron 1, telomeric.	0.883
LSM10	cpsf2	ENSORLP00000011915	ENSORLP00000014579	LSM10, U7 small nuclear RNA associated.	Cleavage and polyadenylation specificity factor subunit 2.	0.857
LSM10	cpsf3	ENSORLP00000011915	ENSORLP00000023537	LSM10, U7 small nuclear RNA associated.	Cleavage and polyadenylation specific factor 3.	0.920
LSM10	ddx20	ENSORLP00000011915	ENSORLP00000011224	LSM10, U7 small nuclear RNA associated.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	0.715
LSM10	lsm11	ENSORLP00000011915	ENSORLP00000009313	LSM10, U7 small nuclear RNA associated.	LSM11, U7 small nuclear RNA associated.	0.999
LSM10	snrpd1	ENSORLP00000011915	ENSORLP00000015671	LSM10, U7 small nuclear RNA associated.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.714
LSM10	snrpd3	ENSORLP00000011915	ENSORLP00000030977	LSM10, U7 small nuclear RNA associated.	Small nuclear ribonucleoprotein Sm D3.	0.994
LSM10	snrpe	ENSORLP00000011915	ENSORLP00000029192	LSM10, U7 small nuclear RNA associated.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
LSM10	snrpg	ENSORLP00000011915	ENSORLP00000030086	LSM10, U7 small nuclear RNA associated.	Small nuclear ribonucleoprotein G.	0.997
LSM10	sympk	ENSORLP00000011915	ENSORLP00000019209	LSM10, U7 small nuclear RNA associated.	Symplekin.	0.959
cpsf2	LSM10	ENSORLP00000014579	ENSORLP00000011915	Cleavage and polyadenylation specificity factor subunit 2.	LSM10, U7 small nuclear RNA associated.	0.857
cpsf2	cpsf3	ENSORLP00000014579	ENSORLP00000023537	Cleavage and polyadenylation specificity factor subunit 2.	Cleavage and polyadenylation specific factor 3.	0.999
cpsf2	lsm11	ENSORLP00000014579	ENSORLP00000009313	Cleavage and polyadenylation specificity factor subunit 2.	LSM11, U7 small nuclear RNA associated.	0.882