LOC101155291 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101155291

Signal-induced proliferation-associated 1. (1034 aa)

Predicted Functional Partners:

LOC101175047

0.851

H2LE95_ORYLA

0.831

LOC101156270

0.598

wdr27

0.580

GNG4

0.573

smoc2

0.571

LOC101158728

0.560

LOC101174851

0.545

RAP2B

0.538

RAP2A

0.538

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GNG4	LOC101155291	ENSORLP00000043590	ENSORLP00000009318	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Signal-induced proliferation-associated 1.	0.573
GNG4	smoc2	ENSORLP00000043590	ENSORLP00000027068	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	SPARC related modular calcium binding 2.	0.842
GNG4	wdr27	ENSORLP00000043590	ENSORLP00000013474	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Uncharacterized protein.	0.848
H2LE95_ORYLA	LOC101155291	ENSORLP00000004264	ENSORLP00000009318	Dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive).	Signal-induced proliferation-associated 1.	0.831
H2LE95_ORYLA	LOC101156270	ENSORLP00000004264	ENSORLP00000045059	Dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive).	Uncharacterized protein.	0.503
H2LE95_ORYLA	LOC101158728	ENSORLP00000004264	ENSORLP00000013930	Dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive).	V-rel avian reticuloendotheliosis viral oncogene homolog A.	0.534
H2LE95_ORYLA	LOC101174851	ENSORLP00000004264	ENSORLP00000006529	Dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive).	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.517
H2LE95_ORYLA	LOC101175047	ENSORLP00000004264	ENSORLP00000043311	Dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive).	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.821
LOC101155291	GNG4	ENSORLP00000009318	ENSORLP00000043590	Signal-induced proliferation-associated 1.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.573
LOC101155291	H2LE95_ORYLA	ENSORLP00000009318	ENSORLP00000004264	Signal-induced proliferation-associated 1.	Dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive).	0.831
LOC101155291	LOC101156270	ENSORLP00000009318	ENSORLP00000045059	Signal-induced proliferation-associated 1.	Uncharacterized protein.	0.598
LOC101155291	LOC101158728	ENSORLP00000009318	ENSORLP00000013930	Signal-induced proliferation-associated 1.	V-rel avian reticuloendotheliosis viral oncogene homolog A.	0.560
LOC101155291	LOC101174851	ENSORLP00000009318	ENSORLP00000006529	Signal-induced proliferation-associated 1.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.545
LOC101155291	LOC101175047	ENSORLP00000009318	ENSORLP00000043311	Signal-induced proliferation-associated 1.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.851
LOC101155291	RAP2A	ENSORLP00000009318	ENSORLP00000038393	Signal-induced proliferation-associated 1.	Uncharacterized protein.	0.538
LOC101155291	RAP2B	ENSORLP00000009318	ENSORLP00000007391	Signal-induced proliferation-associated 1.	RAP2B, member of RAS oncogene family.	0.538
LOC101155291	smoc2	ENSORLP00000009318	ENSORLP00000027068	Signal-induced proliferation-associated 1.	SPARC related modular calcium binding 2.	0.571
LOC101155291	wdr27	ENSORLP00000009318	ENSORLP00000013474	Signal-induced proliferation-associated 1.	Uncharacterized protein.	0.580
LOC101156270	H2LE95_ORYLA	ENSORLP00000045059	ENSORLP00000004264	Uncharacterized protein.	Dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive).	0.503
LOC101156270	LOC101155291	ENSORLP00000045059	ENSORLP00000009318	Uncharacterized protein.	Signal-induced proliferation-associated 1.	0.598