Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101168369Charged multivesicular body protein 6a. (208 aa)    
Predicted Functional Partners:
chmp2a
Charged multivesicular body protein 2A.
   
 0.996
chmp3
Charged multivesicular body protein 3.
   
 0.996
vps25
Vacuolar protein sorting 25 homolog.
   
 0.993
snf8
Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
   
 0.991
chmp7
Charged multivesicular body protein 7.
   
 0.987
vps36
Vacuolar protein sorting 36 homolog.
 
  
 0.986
LOC101156446
Charged multivesicular body protein 4C.
   
 0.985
LOC101173541
Uncharacterized protein.
   
0.985
chmp4b
Charged multivesicular body protein 4Bb.
   
 0.985
vps28
Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.
   
 0.977
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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