Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrrc61Leucine rich repeat containing 61. (262 aa)    
Predicted Functional Partners:
tmem150b
Zgc:123244.
      
 0.796
H2MFT6_ORYLA
Uncharacterized protein.
    
 
 0.770
washc3
WASH complex subunit 3.
      
 0.746
LOC105357787
Zgc:85722.
    
   0.717
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.688
dnajc27
DnaJ (Hsp40) homolog, subfamily C, member 27.
    
  0.681
H2MFS1_ORYLA
Uncharacterized protein.
    
 
 0.609
Ak9
Uncharacterized protein.
    
 
 0.609
gpr12
G protein-coupled receptor 12; Belongs to the G-protein coupled receptor 1 family.
      
 0.541
gpr6
G protein-coupled receptor 6; Belongs to the G-protein coupled receptor 1 family.
      
 0.541
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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