STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dhx9DEAH (Asp-Glu-Ala-His) box helicase 9. (1283 aa)    
Predicted Functional Partners:
LOC101158507
DEAD-box helicase 17; Belongs to the DEAD box helicase family.
   
 0.877
ddx21
DEAD (Asp-Glu-Ala-Asp) box helicase 21.
   
 0.854
myd88
Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.
   
 0.850
Lsm14a
LSM14 domain-containing protein.
   
 
 0.845
MSL3
MSL complex subunit 3.
    
 
 0.845
ilf3
Interleukin enhancer binding factor 3b.
   
 
 0.844
ALYREF
Aly/REF export factor.
   
 0.822
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 0.822
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
 0.819
ilf2
Interleukin enhancer binding factor 2.
   
 
 0.812
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.