STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sfpqSplicing factor proline/glutamine-rich. (719 aa)    
Predicted Functional Partners:
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.552
map2k5
Mitogen-activated protein kinase kinase 5; Belongs to the protein kinase superfamily.
      
 0.541
ktn1
Kinectin 1.
    
 
 0.510
vac14
Vac14 homolog (S. cerevisiae).
      
 0.506
JAZF1
JAZF zinc finger 1b.
      
 0.506
LOC101168736
Cannabinoid receptor 2; Belongs to the G-protein coupled receptor 1 family.
      
 0.506
dlst
Dihydrolipoamide S-succinyltransferase.
      
 0.506
tmem86a
Transmembrane protein 86A.
      
 0.506
ZDHHC18
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.505
slc30a5
Solute carrier family 30 member 5.
      
 0.504
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.