Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lypla2Lysophospholipase 2. (230 aa)    
Predicted Functional Partners:
gpcpd1
Glycerophosphocholine phosphodiesterase 1.
   
 0.950
plb1
Si:ch211-214p16.3.
     
 0.911
LOC105357244
Si:dkey-177p2.18.
     
 0.911
LOC101155983
Patatin-like phospholipase domain containing 6.
  
 
 0.907
LOC101172993
Uncharacterized protein.
  
 
 0.907
LOC101159830
Patatin-like phospholipase domain containing 7b.
  
 
 0.907
chaf1b
Chromatin assembly factor 1, subunit B.
    
 
 0.792
LOC101157546
LRAT domain-containing protein.
     
 0.679
LOC101173355
LRAT domain-containing protein.
     
 0.663
LOC101169090
LRAT domain-containing protein.
     
 0.663
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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