Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168209Neuronal differentiation 4. (351 aa)    
Predicted Functional Partners:
tcf12
Transcription factor 12.
    
 
 0.645
ascl1
Achaete-scute family bHLH transcription factor 1a.
   
 
 0.547
LOC101160895
Vomeronasal type-1 receptor.
      
 0.541
LOC101161142
Vomeronasal type-1 receptor.
      
 0.541
atf3
Activating transcription factor 3.
      
 0.505
LOC100820722
Transcription factor 3b.
    
   0.482
TCF4
Transcription factor 4.
    
   0.482
tcf3
E2A2 transcription factor.
    
   0.482
LOC101174131
IF rod domain-containing protein; Belongs to the intermediate filament family.
      
 0.478
H2M9H6_ORYLA
Achaete-scute family bHLH transcription factor 1b.
   
 
 0.466
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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