Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RIC1RIC1 homolog, RAB6A GEF complex partner 1. (1398 aa)    
Predicted Functional Partners:
rgp1
GP1 homolog, RAB6A GEF complex partner 1.
    
 0.999
LOC101168379
RAB33B, member RAS oncogene family a.
    
 0.962
cog8
Component of oligomeric golgi complex 8.
   
 0.946
rab6a
RAB6A, member RAS oncogene family.
   
 0.922
avl9
AVL9 homolog (S. cerevisiase).
      
 0.911
arfrp1
ADP-ribosylation factor related protein 1.
    
 0.882
rab6b
Uncharacterized protein.
   
 0.859
RAB41
Uncharacterized protein.
   
 0.859
LOC101156359
RAB6B, member RAS oncogene family.
   
 0.859
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.848
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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