STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162765EBF transcription factor 1. (518 aa)    
Predicted Functional Partners:
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.588
plaa
Phospholipase A2-activating protein.
    
   0.560
yod1
YOD1 deubiquitinase.
    
   0.560
LOC101162817
AAA domain-containing protein.
    
 0.502
znf703
Zinc finger protein 703.
      
 0.502
ZNF703
Zinc finger protein 703.
      
 0.502
fign
Fidgetin; Belongs to the AAA ATPase family.
    
 0.502
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.470
spata5l1
Spermatogenesis associated 5-like 1.
   
 0.467
LOC101169556
ADAM metallopeptidase domain 12.
      
 0.410
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.