STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pithd1PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1. (209 aa)    
Predicted Functional Partners:
LOC101163615
FRA10A associated CGG repeat 1.
      
 0.765
lmbrd2
LMBR1 domain containing 2b.
      
 0.756
ubac1
UBA domain containing 1.
      
 0.722
dnajc22
DnaJ (Hsp40) homolog, subfamily C, member 22.
      
 0.704
fam8a1
Family with sequence similarity 8 member A1a.
      
 0.695
LOC101164251
Family with sequence similarity 8 member A1b.
      
 0.695
gpr171
G protein-coupled receptor 171.
      
 0.693
LOC101157953
Proteasome 26S subunit, non-ATPase 4a.
   
   0.649
LOC101173089
Proteasome 26S subunit, non-ATPase 4b.
   
   0.649
tmem115
Transmembrane protein 115.
      
 0.608
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.