zfand4 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

zfand4

Zinc finger, AN1-type domain 4. (716 aa)

Predicted Functional Partners:

rps27a

0.999

uba52

0.995

H2M970_ORYLA

0.995

katnal2

0.984

ubxn7

0.983

psma4

0.982

psmc5

0.980

psma2

0.980

psmc1

0.980

fancm

0.975

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2M970_ORYLA	fancm	ENSORLP00000015051	ENSORLP00000018174	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.969
H2M970_ORYLA	katnal2	ENSORLP00000015051	ENSORLP00000014904	Ubiquitin-like domain-containing protein.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.988
H2M970_ORYLA	psma2	ENSORLP00000015051	ENSORLP00000007808	Ubiquitin-like domain-containing protein.	Proteasome subunit alpha type.	0.913
H2M970_ORYLA	psma4	ENSORLP00000015051	ENSORLP00000001838	Ubiquitin-like domain-containing protein.	Proteasome subunit alpha type.	0.917
H2M970_ORYLA	psmc1	ENSORLP00000015051	ENSORLP00000019820	Ubiquitin-like domain-containing protein.	Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family.	0.938
H2M970_ORYLA	psmc5	ENSORLP00000015051	ENSORLP00000006850	Ubiquitin-like domain-containing protein.	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	0.931
H2M970_ORYLA	rps27a	ENSORLP00000015051	ENSORLP00000038189	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.992
H2M970_ORYLA	uba52	ENSORLP00000015051	ENSORLP00000010731	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.552
H2M970_ORYLA	ubxn7	ENSORLP00000015051	ENSORLP00000031501	Ubiquitin-like domain-containing protein.	UBX domain protein 7.	0.963
H2M970_ORYLA	zfand4	ENSORLP00000015051	ENSORLP00000009398	Ubiquitin-like domain-containing protein.	Zinc finger, AN1-type domain 4.	0.995
fancm	H2M970_ORYLA	ENSORLP00000018174	ENSORLP00000015051	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.969
fancm	rps27a	ENSORLP00000018174	ENSORLP00000038189	Uncharacterized protein.	Ribosomal protein S27a.	0.982
fancm	uba52	ENSORLP00000018174	ENSORLP00000010731	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.969
fancm	zfand4	ENSORLP00000018174	ENSORLP00000009398	Uncharacterized protein.	Zinc finger, AN1-type domain 4.	0.975
katnal2	H2M970_ORYLA	ENSORLP00000014904	ENSORLP00000015051	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Ubiquitin-like domain-containing protein.	0.988
katnal2	psma2	ENSORLP00000014904	ENSORLP00000007808	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Proteasome subunit alpha type.	0.995
katnal2	psma4	ENSORLP00000014904	ENSORLP00000001838	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Proteasome subunit alpha type.	0.832
katnal2	rps27a	ENSORLP00000014904	ENSORLP00000038189	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Ribosomal protein S27a.	0.840
katnal2	uba52	ENSORLP00000014904	ENSORLP00000010731	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.988
katnal2	ubxn7	ENSORLP00000014904	ENSORLP00000031501	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	UBX domain protein 7.	0.995