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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERMP1Endoplasmic reticulum metallopeptidase 1. (887 aa)    
Predicted Functional Partners:
LOC101163579
Erythropoietin receptor.
    
 0.583
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
      
 0.559
ENSORLP00000045948
Bromo domain-containing protein.
      
 0.558
wdr81
WD repeat domain 81.
   
 
 0.531
LOC101172700
V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
     
 0.516
tasp1
Taspase, threonine aspartase, 1.
   
  
 0.516
tes
Testis derived transcript (3 LIM domains).
      
 0.489
sorl1
Sortilin-related receptor, L(DLR class) A repeats containing.
     
 0.488
ngly1
N-glycanase 1.
      
 0.487
tmem259
Transmembrane protein 259.
      
 0.485
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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