Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
LOC101168616RAP1 GTPase activating protein. (752 aa)    
Predicted Functional Partners:
LOC101167529
RAP1A, member of RAS oncogene family b.
    
 0.745
LOC101172864
Uncharacterized protein.
    
 0.745
LOC101171247
RAP1A, member of RAS oncogene family a.
    
 0.745
LOC101171386
Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.
    
 0.711
rnf6
Ring finger protein (C3H2C3 type) 6.
      
 0.700
LOC101166531
SH3 and PX domains 2Aa.
      
 0.681
LOC101164071
Zgc:66447.
      
 0.681
clvs2
Clavesin 2.
      
 0.681
sec63
SEC63 homolog, protein translocation regulator.
      
 0.671
atp8a2
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
      
 0.655
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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