STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp47Ubiquitin specific peptidase 47; Belongs to the peptidase C19 family. (1365 aa)    
Predicted Functional Partners:
polb
DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.
    
 0.734
trip12
Thyroid hormone receptor interactor 12.
   
  
 0.698
poll
Polymerase (DNA directed), lambda; Belongs to the DNA polymerase type-X family.
    
 0.671
fbxw11
F-box and WD repeat domain containing 11a.
    
 
 0.641
LOC101157602
Dickkopf WNT signaling pathway inhibitor 3a.
      
 0.558
CLEC3A
C-type lectin domain family 3 member A.
      
 0.558
LOC101170511
Nuclear factor of activated T cells 5a.
      
 0.558
mical2
Microtubule associated monooxygenase, calponin and LIM domain containing 2a.
      
 0.558
usp10
Ubiquitin carboxyl-terminal hydrolase.
      
 0.554
usp30
Ubiquitin carboxyl-terminal hydrolase.
      
 0.550
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.