LOC101168622 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101168622

Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog a. (75 aa)

Predicted Functional Partners:

LOC101169549

0.967

LOC101163713

0.966

LOC101158106

0.956

LOC101158659

0.944

LOC101168199

0.934

pde6g

0.907

LOC110014956

0.904

LOC111946430

0.770

pde6c

0.741

olgc-r2

0.690

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101158106	LOC101158659	ENSORLP00000007558	ENSORLP00000023702	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.935
LOC101158106	LOC101163713	ENSORLP00000007558	ENSORLP00000031726	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Phosphodiesterase.	0.980
LOC101158106	LOC101168199	ENSORLP00000007558	ENSORLP00000004503	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	WD_REPEATS_REGION domain-containing protein.	0.983
LOC101158106	LOC101168622	ENSORLP00000007558	ENSORLP00000009411	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog a.	0.956
LOC101158106	LOC101169549	ENSORLP00000007558	ENSORLP00000012384	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Phosphodiesterase.	0.981
LOC101158106	LOC110014956	ENSORLP00000007558	ENSORLP00000027697	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Phosphodiesterase 6H, cGMP-specific, cone, gamma, paralog a.	0.947
LOC101158106	LOC111946430	ENSORLP00000007558	ENSORLP00000030431	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.884
LOC101158106	olgc-r2	ENSORLP00000007558	ENSORLP00000011929	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Guanylate cyclase.	0.486
LOC101158106	pde6c	ENSORLP00000007558	ENSORLP00000006480	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Phosphodiesterase.	0.889
LOC101158106	pde6g	ENSORLP00000007558	ENSORLP00000017295	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b.	0.995
LOC101158659	LOC101158106	ENSORLP00000023702	ENSORLP00000007558	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	0.935
LOC101158659	LOC101163713	ENSORLP00000023702	ENSORLP00000031726	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	Phosphodiesterase.	0.981
LOC101158659	LOC101168199	ENSORLP00000023702	ENSORLP00000004503	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	WD_REPEATS_REGION domain-containing protein.	0.987
LOC101158659	LOC101168622	ENSORLP00000023702	ENSORLP00000009411	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog a.	0.944
LOC101158659	LOC101169549	ENSORLP00000023702	ENSORLP00000012384	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	Phosphodiesterase.	0.979
LOC101158659	LOC110014956	ENSORLP00000023702	ENSORLP00000027697	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	Phosphodiesterase 6H, cGMP-specific, cone, gamma, paralog a.	0.919
LOC101158659	LOC111946430	ENSORLP00000023702	ENSORLP00000030431	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.878
LOC101158659	olgc-r2	ENSORLP00000023702	ENSORLP00000011929	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	Guanylate cyclase.	0.486
LOC101158659	pde6c	ENSORLP00000023702	ENSORLP00000006480	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	Phosphodiesterase.	0.733
LOC101158659	pde6g	ENSORLP00000023702	ENSORLP00000017295	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b.	0.996