Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101168622Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog a. (75 aa)    
Predicted Functional Partners:
LOC101169549
Phosphodiesterase.
   
 
 0.975
LOC101163713
Phosphodiesterase.
   
 
 0.975
LOC101158106
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.
   
 
 0.968
LOC101158659
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.
   
 
 0.953
LOC101168199
WD_REPEATS_REGION domain-containing protein.
   
 
 0.945
pde6g
Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b.
  
 
0.935
LOC110014956
Phosphodiesterase 6H, cGMP-specific, cone, gamma, paralog a.
  
  
0.904
erp27
Uncharacterized protein.
      
 0.893
LOC111946430
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
      
 0.872
pde6c
Phosphodiesterase.
   
 
 0.801
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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