eloa protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

eloa

Elongin A. (658 aa)

Predicted Functional Partners:

ELOB

0.965

eloc

0.962

leo1

0.926

ctr9

0.883

ENSORLP00000041981

0.875

polr2a

0.861

polr2b

0.817

wdr61

0.797

supt6h

0.782

rpl11

0.765

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELOB	ENSORLP00000041981	ENSORLP00000034412	ENSORLP00000041981	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.951
ELOB	ctr9	ENSORLP00000034412	ENSORLP00000009105	Ubiquitin-like domain-containing protein.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.755
ELOB	eloa	ENSORLP00000034412	ENSORLP00000009412	Ubiquitin-like domain-containing protein.	Elongin A.	0.965
ELOB	eloc	ENSORLP00000034412	ENSORLP00000032103	Ubiquitin-like domain-containing protein.	Elongin C paralog b; Belongs to the SKP1 family.	0.999
ELOB	leo1	ENSORLP00000034412	ENSORLP00000003825	Ubiquitin-like domain-containing protein.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.829
ELOB	polr2a	ENSORLP00000034412	ENSORLP00000038121	Ubiquitin-like domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.723
ELOB	polr2b	ENSORLP00000034412	ENSORLP00000025492	Ubiquitin-like domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.640
ELOB	rpl11	ENSORLP00000034412	ENSORLP00000030736	Ubiquitin-like domain-containing protein.	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.714
ELOB	supt6h	ENSORLP00000034412	ENSORLP00000027236	Ubiquitin-like domain-containing protein.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.664
ELOB	wdr61	ENSORLP00000034412	ENSORLP00000037498	Ubiquitin-like domain-containing protein.	WD repeat domain 61.	0.801
ENSORLP00000041981	ELOB	ENSORLP00000041981	ENSORLP00000034412	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.951
ENSORLP00000041981	ctr9	ENSORLP00000041981	ENSORLP00000009105	Uncharacterized protein.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.545
ENSORLP00000041981	eloa	ENSORLP00000041981	ENSORLP00000009412	Uncharacterized protein.	Elongin A.	0.875
ENSORLP00000041981	leo1	ENSORLP00000041981	ENSORLP00000003825	Uncharacterized protein.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.642
ENSORLP00000041981	polr2a	ENSORLP00000041981	ENSORLP00000038121	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.569
ENSORLP00000041981	polr2b	ENSORLP00000041981	ENSORLP00000025492	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.571
ENSORLP00000041981	rpl11	ENSORLP00000041981	ENSORLP00000030736	Uncharacterized protein.	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.545
ENSORLP00000041981	supt6h	ENSORLP00000041981	ENSORLP00000027236	Uncharacterized protein.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.560
ctr9	ELOB	ENSORLP00000009105	ENSORLP00000034412	CTR9 homolog, Paf1/RNA polymerase II complex component.	Ubiquitin-like domain-containing protein.	0.755
ctr9	ENSORLP00000041981	ENSORLP00000009105	ENSORLP00000041981	CTR9 homolog, Paf1/RNA polymerase II complex component.	Uncharacterized protein.	0.545