STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
eloaElongin A. (658 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.993
eloc
Elongin C paralog b; Belongs to the SKP1 family.
    
 0.977
ENSORLP00000041981
Uncharacterized protein.
    
 0.941
ELOB
Ubiquitin-like domain-containing protein.
    
 0.936
ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component.
    
 0.860
wdr61
WD repeat domain 61.
    
 0.854
rpl23
Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
    
 
 0.835
rpl18
Ribosomal protein L18.
   
   0.832
rpl4
Ribosomal protein L4.
    
   0.824
rpl30
Ribosomal protein L30.
    
   0.824
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.